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Figure 1 DCC map for the topo I DNA complex. Green, yellow and red points represent correlated values with 0.55 Cij < 0.70, 0.70 Cij < 0.85 and 0.85 Cij < 1, respectively (Cij is defined in Materials and Methods). Anti correlation values 0.65 Cij < 0.50 are represented in blue. The correlation range 0 Cij < 0.55 and the anti correlation range 0.50 Cij < 0 are represented in a grey scale depending on the absolute value of the correlation. The value 1, along the diagonal (correlation of the residue with itself), is represented in black. Secondary structure elements are shown in the left part of the figure..

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Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Abstract

The collective motions of the core and C terminal domains of human topoisomerase I (topo I) have been analysed by molecular dynamics simulation of the.....
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Copyright 2003 Oxford University Press



Keywords

1A31

Other images from the same article


Highslide JS
DCC map for the topo I DNA complex...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Displacement of each topo I C atom along the three eigenvectors having the largest eigenvalues...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Order parameter S2 for the (black line) and (red line) dihedral angles of topo I...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Projections of the topo I MD motions along the first eigenvector...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Projections of the topo I MD motions along the third eigenvector...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Ramachandran plots of the topo I DNA complex representing the protein / conformations visited by the MD simulation (black dots)...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Two MD snapshots taken as representatives of the two different families of conformations visited by Glu582 during the simulation...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details