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Figure 3 Ramachandran plots of the topo I DNA complex representing the protein / conformations visited by the MD simulation (black dots). The / values observed in the four X ray diffraction structures with PDB entries 1a31, 1a35, 1a36 and 1ej9 are also reported for comparison (red diamonds)..

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Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Abstract

The collective motions of the core and C terminal domains of human topoisomerase I (topo I) have been analysed by molecular dynamics simulation of the.....
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Copyright 2003 Oxford University Press



Keywords

1A31

Other images from the same article


Highslide JS
DCC map for the topo I DNA complex...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Displacement of each topo I C atom along the three eigenvectors having the largest eigenvalues...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Order parameter S2 for the (black line) and (red line) dihedral angles of topo I...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Projections of the topo I MD motions along the first eigenvector...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Projections of the topo I MD motions along the third eigenvector...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Ramachandran plots of the topo I DNA complex representing the protein / conformations visited by the MD simulation (black dots)...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details
Highslide JS
Two MD snapshots taken as representatives of the two different families of conformations visited by Glu582 during the simulation...

Article : Protein concerted motions in the DNA human topoisomerase I complex
Nucleic Acids Res. 2003 Mar 1; 31(5):1525-1535

Click to view details